After adding a trap into the map (which is no where near this error), I noticed this occured with one of the prisms that acts as a 'wall'

Everything looks fine in Radiant. If I remove the prism, the problem goes away. If I alter the dimensions of the prism there is no change. I also tried deleting that prism and copying another working one from the map to replace it. No change.
Any suggestions? Its not overlapping other brushes or anything so it just seems random to me.